RnoEX0023569 @ rn6
Exon Skipping
Gene
ENSRNOG00000023317 | Colgalt1
Description
collagen beta(1-O)galactosyltransferase 1 [Source:RGD Symbol;Acc:1309002]
Coordinates
chr16:20046965-20048099:+
Coord C1 exon
chr16:20046965-20047084
Coord A exon
chr16:20047850-20047921
Coord C2 exon
chr16:20047993-20048099
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTACCCTCAGTGAAGCAT
3' ss Score
1.28
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGGTGCAAATGTACGTGTGCAATAAGGAGGTGTACGGCTTCTTGCCCGTGCCGCTACGCTCGCACAGCAGCCTGCAGGACGAGGCAGAGAGCTTCATGCACGTGCAGCTGGAGGTCATGG
Seq A exon
CATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCACCCAAGAAAACTGCAGACAAGATGGGCTTTGACGAG
Seq C2 exon
GTCTTCATGATCAACCTGAAGCGGAGGCTGGACCGGCGAGAGCGCATGCTGCGGGCACTGCATGAGCAGGAGATTGACTTCCAGCTGGTAGAGGCTGTGGACGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023317-'6-13,'6-12,7-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGTGTACGGCTTCTTG
R:
GCTGGAAGTCAATCTCCTGCT
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]