DreEX0023622 @ danRer10
Exon Skipping
Gene
ENSDARG00000073974 | colgalt1
Description
collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
Coordinates
chr3:52464028-52466261:+
Coord C1 exon
chr3:52464028-52464147
Coord A exon
chr3:52464355-52464431
Coord C2 exon
chr3:52466161-52466261
Length
77 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCTTTTATTTCACAGTAC
3' ss Score
8.3
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
AAGTCCAAATGTTTATTTGCAACAGAGAAATATATGGGCACCTCCCAGTTCCTCTTCGTGCCCACAGCACTCTACAGGATGAGGCAGACAGCTTCATTCACACTATGCTGGAGGTCAACG
Seq A exon
TACGAAATCCTCCAGTTGAGCCTTCAAGATACTTACCCAAACCTGTCAGAAAACCTGATAAAATGGGCTTTGATGAG
Seq C2 exon
GGAAATCCCGGCGAAGCTGATTGGTCAGCGTAGCAACTTCAGTGACGTGATGGAATTCCCTTGTCGGTGAAGAGGGGTTTCCTTAGTCGGTTGCTAGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073974-'7-8,'7-7,8-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCCAGTTCCTCTTCGTG
R:
GCAACCGACTAAGGAAACCCC
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]