GgaEX6015030 @ galGal4
Exon Skipping
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4935718-4936215:-
Coord C1 exon
chr17:4936096-4936215
Coord A exon
chr17:4935934-4936010
Coord C2 exon
chr17:4935718-4935824
Length
77 bp
Sequences
Splice sites
3' ss Seq
GATTTTCCATCTCTCTGCAGTGG
3' ss Score
9.35
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTGCTGAGGTCCACGTGTGCAACCAGCAGCGCTTTGGCTACATCAACGTCCCCGTGAAGGCCCATCAGACGCTGGAGGATGAGCGCGTCAACTTTGTGCATCTCACGCTGGAGGCCATGG
Seq A exon
TGGATGGTCCCCCCATGCAGCGCTCCCGGCACATCTCTGTCCCGCCCAAACCACTCACCAAATTGGGCTTTGATGAA
Seq C2 exon
ATCTTCCTCATCAATCTGGTGCGGCGGCCGGACCGGCGCCGGCGGATGCTGGAGTCCCTGCAGGAGCTGGAGATCGCTGCGCGGGTGGTGGATGCAGTGGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCTTTGGCTACATCAAC
R:
GATCTCCAGCTCCTGCAGGG
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]