RnoEX0020283 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8438156-8440222:+
Coord C1 exon
chr3:8438156-8438275
Coord A exon
chr3:8438553-8438629
Coord C2 exon
chr3:8440090-8440222
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTTCCTTTTGCAGTGG
3' ss Score
9.1
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGGTCTCAGTGCACGTGTGCAACGACCATCGTTACGGATACATGAATGTAGGCGTGAAACCCCACCAGGGGCTGGAGGAAGAGAAGACCAACTTTATCCACCTGATTTTGGAAGCACTAG
Seq A exon
TGGACGGGCCCCCCATGATGGCCTCAGCTCATGTATCTCGGCCCCCAAAGAAGCCCAGCAAAATGGGGTTTGATGAA
Seq C2 exon
GACACTCAACAGCAGTATCCTCAAGCACCTTGGTGTGGACCTGCTCCCTGGCTACCAGGACCCCTACTCAGGCCGCACCCTGACCAAGGGTGAGGTGGGCTGCTTCCTCAGCCACTACTCCATCTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604_MULTIEX1-5/7=4-7
Average complexity
C2
Mappability confidence:
80%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGGAAGAGAAGACCA
R:
CCCAGATGGAGTAGTGGCTGA
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]