HsaEX0014878 @ hg38
Exon Skipping
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128428302-128429036:+
Coord C1 exon
chr9:128428302-128428421
Coord A exon
chr9:128428757-128428833
Coord C2 exon
chr9:128428930-128429036
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGGTGTGCTTCCCTTTGCAGTGG
3' ss Score
9.58
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGTCTCCGTCCACGTGTGCAATGAGCACCGTTATGGGTACATGAATGTGCCGGTGAAATCCCACCAGGGGCTGGAAGACGAGAGGGTCAACTTCATCCACCTGATCTTAGAAGCACTAG
Seq A exon
TGGACGGCCCCCGCATGCAGGCCTCAGCTCATGTGACTCGGCCCTCTAAGAGGCCCAGCAAGATAGGGTTTGACGAG
Seq C2 exon
GTCTTTGTCATCAGCCTGGCTCGCAGGCCTGACCGTCGGGAACGCATGCTCGCCTCGCTCTGGGAGATGGAGATCTCTGGGAGGGTGGTGGACGCTGTGGATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAGCACCGTTATGGGT
R:
ATCTCCATCTCCCAGAGCGAG
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development