DreEX0021035 @ danRer10
Exon Skipping
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10402419-10406203:+
Coord C1 exon
chr10:10402419-10402538
Coord A exon
chr10:10405946-10406022
Coord C2 exon
chr10:10406097-10406203
Length
77 bp
Sequences
Splice sites
3' ss Seq
AAGGGATTTATCTTCTACAGTTC
3' ss Score
4.4
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGGTTCAGATGTATCTGTGCAACAAGGAGCGTTATGGGTATCTGAACGTGCCTGCAAAGCCTCATCAGACTGTGGAGGACGATCGCATCAATTTTGTTCACCTTTACCTGGAATCTCTGA
Seq A exon
TTCATGGACCCCCAATGTACGTCTCTCGCTACGTCCACGTTCCTCCCAAACAGTCAGATCTCATGGGTTTCGATGAG
Seq C2 exon
ATTTACTTGATAAACCTGCGCAGACGTCAAGACCGCCGGGACAGGATGTTATGGTCTCTGTATGAGCTAGAGATTGATGCTAAAGTTGTGGATGCTATAGATGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCTGTGCAACAAGGAGCG
R:
GACCATAACATCCTGTCCCGG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]