MmuEX6036343 @ mm10
Exon Skipping
Gene
ENSMUSG00000034807 | Colgalt1
Description
collagen beta(1-O)galactosyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924348]
Coordinates
chr8:71619652-71620854:+
Coord C1 exon
chr8:71619652-71619771
Coord A exon
chr8:71620601-71620677
Coord C2 exon
chr8:71620748-71620854
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTCTTACTCTCAGTGA
3' ss Score
9.15
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
AGGTGCAAATGTACGTGTGCAATAAGGAGGTGTACGGCTTCCTGCCCGTGCCACTGCGTGCGCACAGCAGCCTGCAGGACGAAGCAGAGAGCTTCATGCACGTGCAGCTGGAGGTCATGG
Seq A exon
TGAAACATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCACCCAGGAAGACTTCTGACAAGATGGGCTTCGATGAG
Seq C2 exon
GTCTTCATGATCAACCTGAAGCGGAGGCGGGACCGGCGAGAACGCATGCTGCGGGCACTACATGAGCAGGAGATTGACTGCCAGCTGGTGGAGGCTGTAGATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034807-'15-19,'15-15,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATAAGGAGGTGTACGGC
R:
TCTCCTGCTCATGTAGTGCCC
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types