GgaEX6043977 @ galGal3
Exon Skipping
Gene
ENSGALG00000004775 | GLT25D2
Description
NA
Coordinates
chr8:8052365-8053951:-
Coord C1 exon
chr8:8053832-8053951
Coord A exon
chr8:8053639-8053715
Coord C2 exon
chr8:8052365-8052452
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGATCTCTGCTCTCTTTCAGTCG
3' ss Score
7.18
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAATTCAGATGTTCATCTGCAACCGTGAGCACTACGGTTTCCTTCCCATGCCCCTGAAGTCACACCAGACGCTGCAAGAAGAGACAGAGAACTTTGTGCACACACTGATTGAGGCTATGA
Seq A exon
TCGATCGTCCTCCCATTGAGCCCTCTCAGTATGTCTCTGTTCCTCCGAAGCGCCCTGACAAGATGGGATTTGATGAA
Seq C2 exon
ATTTTCATGATCAATCTGAAGCGTCGGAAGGACAGGCGGGACCGGATGCTGCGGACTCTCTATGAGCAGGAGATTGCAGTCAAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004775-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
C2:
PF0175512=Glyco_transf_25=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCAACCGTGAGCACTAC
R:
TCCTGCTCATAGAGAGTCCGC
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]