MmuEX6028379 @ mm9
Exon Skipping
Gene
ENSMUSG00000026471 | Mr1
Description
major histocompatibility complex, class I-related [Source:MGI Symbol;Acc:MGI:1195463]
Coordinates
chr1:156979490-156984904:-
Coord C1 exon
chr1:156984644-156984904
Coord A exon
chr1:156983705-156983980
Coord C2 exon
chr1:156979490-156979765
Length
276 bp
Sequences
Splice sites
3' ss Seq
ATAGGCTGTATATGTTTCAGGGC
3' ss Score
6.9
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGACCCACTCGCTGAGATATTTTCGTCTAGCTGTTTCCGATCCTGGTCCCGTCGTCCCTGAATTTATCTCTGTTGGGTATGTGGACTCACACCCTATCACTACATACGACAGTGTCACTCGACAGAAGGAGCCGAAAGCTCCATGGATGGCAGAGAACCTGGCACCTGATCACTGGGAGAGGTACACTCAGCTGCTAAGGGGCTGGCAGCAGACATTCAAGGCGGAGCTGAGGCACCTACAGAGGCACTACAACCACTCAG
Seq A exon
GGCTTCACACCTACCAGAGAATGATTGGCTGTGAGTTGCTAGAAGATGGCAGCACCACAGGGTTTCTCCAGTATGCATATGATGGACAAGATTTCATCATCTTCAATAAAGACACCCTCTCCTGGTTGGCCATGGATTATGTGGCTCACATCACCAAGCAAGCATGGGAGGCCAACCTGCATGAGTTGCAATACCAAAAGAACTGGCTGGAAGAAGAATGCATTGCCTGGCTAAAGAGGTTCTTGGAATATGGAAGAGATACCCTAGAAAGAACAG
Seq C2 exon
AGCATCCAGTGGTAAGAACAACTCGAAAGGAAACTTTTCCAGGGATTACAACTTTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGACATGGATGAAAAATGGGGAAGAAATTGCCCAAGAAGTGGATTACGGAGGGGTACTTCCCAGCGGGGATGGAACCTATCAAACGTGGCTGTCAGTTAATCTGGATCCTCAGAGCAATGATGTTTATTCTTGTCATGTGGAGCACTGTGGTCGCCAAATGGTTCTGGAGGCCCCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026471-'3-3,'3-2,4-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.011 C2=0.065
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
PF0012913=MHC_I=PD(50.0=94.6)
C2:
PF0765410=C1-set=WD(100=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGGCAGAGAACCTGG
R:
TTGATAGGTTCCATCCCCGCT
Band lengths:
299-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: