RnoEX0055528 @ rn6
Exon Skipping
Gene
ENSRNOG00000003522 | Mr1
Description
major histocompatibility complex, class I-related [Source:RGD Symbol;Acc:1593291]
Coordinates
chr13:72775422-72781058:-
Coord C1 exon
chr13:72780798-72781058
Coord A exon
chr13:72779706-72779981
Coord C2 exon
chr13:72775422-72775697
Length
276 bp
Sequences
Splice sites
3' ss Seq
ATAGCCTGTGTATGTTTCAGGGC
3' ss Score
8.79
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GGACCCACTCTCTGAGATACTTTCGTCTGGCTATTTCGGATCCTGGCCCTGGAGTCCCTGAATTTATCTCAGTTGGGTATGTGGACTCACACCCTATCACTACATACGACAGCGTCACCCGACAGAAGGAGCCAAGAGCCCCATGGATGGCGGAGAACCTGGCGCCTGACCACTGGGAGAGGTACACTCAGCTGCTAAGAGGCTGGCAGCGGACCTTCCAGACAGAGCTGAGGCACCTGCAGAGGCACTACAACCACTCAG
Seq A exon
GGCTTCACACCTACCAGAGAATGATCGGTTGTGAGTTGCTGGAAGACGGCAGCACCACAGGGTTTCTCCAGTATGCATATGATGGACAAGATTTCATTGTCTTCGATAAAGACACCCTCTCCTGGCTGGCTATGGATAATGTGGCTCACATCACCAAGCGAGCATGGGAGGCCAACCTGCATGAGTTGCAATACCAAAAGAACTGGCTAGAAGAAGAGTGCATTGCCTGGCTAAAGAGGTTCTTGGAGTATGGAAGTGATGCCCTAGAAAGAACAG
Seq C2 exon
AACATCCAGTAGTAAGAACAACTCGAAAGGAAACGTTTCCAGGGATTACCACTCTCTTCTGCAGAGCTCATGGCTTCTACCCACCAGAAATTTCCATGATATGGAAGAAAAATGGGGAAGAAATTGTCCAGGAGGTGGATTATGGAGGGGTGCTTCCCAGTGGGGATGGAACCTATCAAATGTGGGTGTCGGTTGATCTGGATCCTCAGACCAAAGACATTTATTCTTGTCATGTGGAGCACTGTGGTCTCCAAATGGTTCTGGAGGCCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003522_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.007 C2=0.048
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(49.4=98.9)
A:
PF0012913=MHC_I=PD(50.0=94.6)
C2:
PF0765410=C1-set=WD(100=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCACTACAACCACTC
R:
GGCCTCCAGAACCATTTGGAG
Band lengths:
292-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]