MmuEX6029763 @ mm9
Exon Skipping
Gene
ENSMUSG00000047369 | Dnahc14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:183682152-183685575:+
Coord C1 exon
chr1:183682152-183682283
Coord A exon
chr1:183682647-183682742
Coord C2 exon
chr1:183685374-183685575
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTTACTCTTGTGAAGGTG
3' ss Score
5.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAACAAGATTGCGATGGTTTCTGTGGCTTGTTGCTCCATGTGCCAGTGGGTGATTGCCTTGAATAACTACCATGAAGTACAGAAG
Seq A exon
GTGGTGCGTCCTAAGCAGGCACAAGTGGCAGAGGCTCAGAACGTCCTTCAGATTGCAAAGCAGAGGTTGTTGGAAAAGCAAAGAGGTTTACAACTG
Seq C2 exon
ATTGAAGATCATCTGCAGTTCCTGCACACGTCCTACAGAGACATTGTTACTGAAAAGCATCAACTGGCGTCTCGGAAAAAGCTGGCCACCAAGCGCCTCCAGTGCGCATCCGTCCTGCTGACCGTCCTGGAGGACGAGAAGGTATGGCTTCCCTTGGCCTTTTTATTCCCTCTACTCGTTCTCATGGGGTTCAACAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'51-52,'51-51,52-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100)
A:
PF127772=MT=FE(9.2=100)
C2:
PF127772=MT=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGACTTCAACCCCAACAA
R:
TTTCCGAGACGCCAGTTGATG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: