RnoEX0001847 @ rn6
Exon Skipping
Gene
ENSRNOG00000048741 | AABR07021946.1
Description
NA
Coordinates
chr13:100054961-100058327:+
Coord C1 exon
chr13:100054961-100055092
Coord A exon
chr13:100055445-100055540
Coord C2 exon
chr13:100058187-100058327
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGTGTTTTACTCTCACGAAGGTG
3' ss Score
4.53
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAGCAAGATTGCTATGGTTTCTGTGGCTTGTTGCTCCATGTGTCAGTGGGTGATCGCCTTGAACAACTACCATGAAGTACAGAAG
Seq A exon
GTGGTGCGTCCTAAGCAGGCACAAGTGGCGGAGGCACAGAACGTTCTCCAAATTGCAAAGCAAAGGCTGTTTGAAAAGCAAAGAGGTTTACAACTG
Seq C2 exon
ATCGAAGAGCATCTGCAGTTCTTGCACACATCCTACAGAGACATTGTTACTGAGAAACATCAACTGGCAAATCGAAAAAAGCTGGCCACCAAGCGCCTCCAGTGCGCATCCGTCTTGCTGACTGTTCTGGAGGACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048741_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100)
A:
PF127772=MT=FE(9.2=100)
C2:
PF127772=MT=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATCGCCTTGAACAACT
R:
TCGTCCTCCAGAACAGTCAGC
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]