MmuEX6030126 @ mm9
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:194236899-194258801:+
Coord C1 exon
chr1:194236899-194237098
Coord A exon
chr1:194242565-194242817
Coord C2 exon
chr1:194258605-194258801
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCTTGTCTGGCCAGGTC
3' ss Score
10.62
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
CTCTTCTGTATGCCACCATCTTTGGGAACGTGACAACCATTTTCCAGCAGATGTACGCCAACACCAACAGGTACCACGAGATGCTCAACAGTGTCCGGGATTTCCTGAAGCTCTACCAGGTGCCCAAAGGGCTGAGTGAGCGGGTCATGGACTACATTGTGTCCACCTGGTCCATGTCCCGAGGCATCGACACAGAGAAG
Seq A exon
GTCCTGCAGATCTGCCCCAAGGACATGCGAGCCGACATTTGCGTGCACCTGAACCGCAAAGTGTTCAAAGAACACCCTGCCTTTCGATTGGCCAGCGATGGCTGCCTGCGGGCCTTGGCCATGGAGTTCCAGACAGTGCACTGTGCCCCAGGGGACCTCATCTATCATGCTGGAGAGAGTGTGGACAGCCTCTGCTTCGTGGTCTCAGGCTCCCTGGAGGTGATCCAGGATGACGAGGTGGTGGCCATCCTAG
Seq C2 exon
GGAAAGGAGACGTGTTTGGGGATGTTTTCTGGAAGGAAGCTACCCTTGCACAGTCCTGTGCTAATGTCCGGGCCTTGACCTACTGTGACCTGCACGTGATCAAGAGGGACGCCCTTCAGAAAGTGCTAGAATTCTACACAGCCTTCTCCCACTCCTTCTCCCGGAACCTGATTCTCACCTACAACCTGAGGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.0=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1),PF078836=Cupin_2=PU(85.4=48.2)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2),PF078836=Cupin_2=PD(12.5=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTCAACAGTGTCCGG
R:
ATCAGGTTCCGGGAGAAGGAG
Band lengths:
295-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: