DreEX0040875 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37980649-37983675:+
Coord C1 exon
chr22:37980649-37980848
Coord A exon
chr22:37982495-37982747
Coord C2 exon
chr22:37983479-37983675
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTGCTCTTTTGCAGGTT
3' ss Score
11.08
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTCTCCTTTATGCCACCATCTTTGGTAACGTAACCAACATCTTCCAGCAAATGTACGCCAACACCAACCGCTACCACGAGATGTTAAACAGCGTGAGAGATTTCCTGAAGCTCTACCAGGTTCCCAAAGGCCTCAGCGAGCGGGTCATGGATTATATCGTCTCCACGTGGTCCATGTCCAGAGGAATCGACACTGATAAG
Seq A exon
GTTTTGCAAATCTGCCCCAAAGACATGCGAGCCGACATCTGCGTTCATCTCAACAGGAAGGTGTTCAAAGAGCACCCTGCGTTTCGCCTGGCCAGCGACGGCTGTTTAAGAGCTCTCGCTATGGAGTTTCAGACCATCCACAGCGCGCCGGGAGACCTCATATACCACGCGGGCGAGAGTGTGGACAGCCTCTGCTTTGTGGTGTCGGGGTCTTTGGAGGTCATCCAGGATGATGAAGTTGTTGCAATTTTGG
Seq C2 exon
GAAAGGGCGATGTGTTCGGCGATGTGTTCTGGAAGGAGGTGAATTTGGCTCAATCCTGTGCAAACGTGCGAGCGCTGACCTACTGCGACCTCCACATCATCAAGCGGGACGCTTTACAGAAGGTGCTGGAGTTTTACACCGCCTTCGCCGGACACTTCTCACGCAATCTGGTGCTCACCTACAACCTGAGGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.5=14.9)
A:
PF078836=Cupin_2=PU(86.0=50.6),PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF078836=Cupin_2=PD(12.0=9.1),PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGTACGCCAACACCA
R:
CGAAGGCGGTGTAAAACTCCA
Band lengths:
302-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]