BtaEX0018825 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75314162-75404939:-
Coord C1 exon
chr10:75404740-75404939
Coord A exon
chr10:75336245-75336497
Coord C2 exon
chr10:75314162-75314358
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTCACTTTCTTCAGGTC
3' ss Score
10.95
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGATACCATGAGATGCTGAATAATGTACGGGACTTTCTGAAACTCTATCAGGTCCCCAAAGGCCTTAGTGAACGAGTCATGGATTATATTGTCTCAACATGGTCCATGTCAAAAGGCATCGACACAGAAAAG
Seq A exon
GTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGATATCTGTGTTCATCTAAACCGGAAGGTTTTTAATGAACATCCTGCTTTTCGATTGGCCAGCGATGGGTGTCTGCGAGCCTTGGCAGTAGAATTCCAAACTATTCACTGTGCTCCTGGGGACCTCATTTACCATGCTGGAGAAAGTGTGGATGCCCTCTGCTTTGTGGTGTCAGGATCCTTGGAAGTCATCCAGGATGATGAGGTGGTGGCTATTTTAG
Seq C2 exon
GGAAAGGGGATGTGTTTGGAGACATCTTCTGGAAGGAAACTACCCTTGCTCACGCGTGTGCCAACGTCCGAGCACTGACATACTGTGACCTCCACATCATCAAGCGAGAAGCCTTGCTTAAAGTCCTGGACTTTTATACAGCTTTTGCAAACTCGTTCTCAAGGAATCTCACTCTCACTTGCAATCTAAGAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'10-18,'10-16,11-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.6=14.9)
A:
PF078836=Cupin_2=PU(64.1=48.2),PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF078836=Cupin_2=PD(34.4=33.3),PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACACCAACCGATACCAT
R:
AGAACGAGTTTGCAAAAGCTGT
Band lengths:
303-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development