RnoEX0046041 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:97926551-97977520:-
Coord C1 exon
chr6:97977321-97977520
Coord A exon
chr6:97938096-97938348
Coord C2 exon
chr6:97926551-97926747
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTCACTCTCTTCAGGTC
3' ss Score
11.52
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGTTACCATGAGATGCTGAACAATGTTCGAGATTTCCTGAAATTATATCAGGTCCCGAAAGGCCTTAGTGAACGAGTCATGGATTACATTGTGTCAACGTGGTCAATGTCAAAAGGCATCGACACAGAGAAG
Seq A exon
GTCCTCTCCATCTGCCCCAAGGACATGAGAGCTGACATCTGTGTTCATCTGAACCGGAAGGTTTTTAATGAACATCCTGCATTCCGATTGGCCAGCGATGGATGTCTGCGTGCCTTGGCAGTGGAGTTCCAAACCATTCACTGTGCTCCTGGGGACCTGATTTACCATGCTGGAGAGAGTGTGGACGCCCTCTGCTTTGTGGTGTCAGGGTCCTTGGAGGTTATCCAGGATGAGGAGGTGGTGGCTATCTTAG
Seq C2 exon
GGAAAGGTGATGTGTTTGGAGACATCTTCTGGAAGGAAACCACCCTTGCTCATGCATGTGCCAATGTCCGGGCCCTGACTTACTGTGACCTGCACATCATCAAGAGAGAAGCCTTGCTCAAAGTCCTTGACTTCTATACAGCATTTGCAAACTCATTCTCCAGGAACCTCACTCTCACTTGCAATCTAAGGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'12-9,'12-8,13-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.6=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACCGTTACCATGAGATGC
R:
GGTTCCTGGAGAATGAGTTTGCA
Band lengths:
306-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]