DreEX6044473 @ danRer10
Exon Skipping
Gene
ENSDARG00000043220 | kcnh5a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5a [Source:ZFIN;Acc:ZDB-GENE-061106-2]
Coordinates
chr20:20112331-20127524:-
Coord C1 exon
chr20:20127325-20127524
Coord A exon
chr20:20119386-20119638
Coord C2 exon
chr20:20112331-20112527
Length
253 bp
Sequences
Splice sites
3' ss Seq
GTTCTTGCTCTACTCATCAGGTT
3' ss Score
6.08
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTCTTCTGTACGCAACCATCTTTGGAAACGTGACCACCATCTTTCAGCAGATGTACACCAACACCAACCGCTACCATGAGATGCTGAACAACGTGAGAGACTTTCTGAAGCTCTATCAGGTGCCTAAAGGGCTGAGCGAGAGGGTTATGGACTACATCGTGTCCACGTGGGCCATGACTAAAGGCATAGACACAGAGAAG
Seq A exon
GTTCTGTCCATTTGTCCTAAAGACATGCGGGCAGACATCTGCGTGCACCTGAACCGGCAGGTGTTCAATGAGCACCCTGCTTTCCGGCTGGCCAGTGACGGCTGCCTGCGCTCTTTGGCGGTGGAGTTTCAGACCACACACTGCGCTCCAGGAGATCTCATCTTCCATGCCGGTGAGAGTGTGGACACCCTGTGCTTCGTCGTGTCTGGATCGCTGGAGGTCATTCAGGATGATGAAGTTATTGCCATTCTAG
Seq C2 exon
GTAAGGGCGATGTGTTTGGTGACGTGTTCTGGAAGGAGTCGTCTCTGGCTCATGCCTGTGCAAACGTGAGGGCCCTGACATACTGCGACCTGCACGTCATCAGGAGAGACGCATTACTCAAAGTGCTGGAGTTTTACACGGCCTTCGCTAACTCCTTTTCCAGAAACCTCATCCTCACCTGCAACCTCCGCAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043220-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.0=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACCAACCGCTACCATGA
R:
AAAAGGAGTTAGCGAAGGCCG
Band lengths:
301-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]