MmuEX6081557 @ mm10
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:74965125-75007799:-
Coord C1 exon
chr12:75007600-75007799
Coord A exon
chr12:74976471-74976723
Coord C2 exon
chr12:74965125-74965321
Length
253 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCACTCTCTTTTAGGTC
3' ss Score
12.42
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGTTACCATGAGATGCTGAATAATGTTCGAGATTTCCTGAAATTATATCAGGTCCCAAAAGGCCTTAGTGAACGAGTGATGGATTATATTGTCTCAACATGGTCAATGTCAAAAGGCATCGACACAGAGAAG
Seq A exon
GTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGACATCTGTGTTCATCTGAACCGGAAGGTTTTTAATGAACATCCTGCATTCCGATTGGCCAGCGATGGATGTCTGCGTGCCTTGGCAGTGGAGTTCCAAACCATTCACTGTGCTCCTGGGGACCTGATTTACCATGCTGGAGAGAGTGTGGATGCCCTCTGCTTTGTGGTGTCCGGGTCCTTGGAAGTTATCCAGGATGAGGAGGTGGTGGCCATTTTAG
Seq C2 exon
GGAAAGGTGACGTGTTTGGAGACATCTTCTGGAAGGAAACCACCCTTGCTCATGCGTGTGCCAATGTCCGGGCCCTGACTTACTGTGATCTGCACATCATCAAGCGAGAAGCCTTGCTCAAGGTCCTTGACTTCTATACAGCATTTGCAAACTCATTTTCCAGGAACCTCACTCTCACTTGCAATCTAAGGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'10-10,'10-9,11-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.6=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACCGTTACCATGAGATGC
R:
GGTTCCTGGAAAATGAGTTTGCA
Band lengths:
306-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types