DreEX0040893 @ danRer10
Exon Skipping
Gene
ENSDARG00000069117 | kcnh5b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5b [Source:ZFIN;Acc:ZDB-GENE-090319-1]
Coordinates
chr13:37197155-37210997:-
Coord C1 exon
chr13:37210798-37210997
Coord A exon
chr13:37210470-37210722
Coord C2 exon
chr13:37197155-37197351
Length
253 bp
Sequences
Splice sites
3' ss Seq
GTGAATTAATCTTTGCCCAGGTG
3' ss Score
5.29
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CTCTCCTTTACGCCACTATCTTCGGTAATGTGACCACAATTTTCCAGCAGATGTATGCGAACACCAACCGTTACCATGAAATGCTGAATAACGTGCGAGATTTCCTCAAGCTTTACCAAGTGCCCAAAGGCCTCAGTGAGAGAGTGATGGACTACATTGTCTCCACATGGTCCATGTCCAAAGGCATTGACACAGAGAAG
Seq A exon
GTGCTCTCCATCTGCCCTAAAGACATGCGGGCAGACATCTGTGTGCACCTAAACAGGAAAGTGTTTAATGAGCATCCAGCATTCCGACTGGCCAGTGACGGATGTCTGCGATCATTGGCCGTGGAGTTTCAGATGATACACTCTGCCCCCGGTGACCTCATCTTCCATGCGGGGGAAAGCGTGGACTTGCTCTGCTTTGTGGTGTCAGGGTCACTGGAGGTCATCCAGGATGACGAGGTCATCGCTATATTGG
Seq C2 exon
GTAAAGGGGACGTGTTTGGTGATGTGTTCTGGAAGGAGACGACTTTAGCCCACTCTTGCGCCAATGTTCGGGCGTTAACATACTGTGATCTTCACATCATAAAGAGAGAAGCCTTGCTGAAAGTGTTGGACTTCTACACGGCTTTTGCAAACTCTTTCTCCAGAAATCTATTTCTCACCTGCAACCTACGCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069117-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.5=14.9)
A:
PF0002724=cNMP_binding=PU(44.8=45.9)
C2:
PF0002724=cNMP_binding=PD(54.0=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCGAGATTTCCTCAAGCT
R:
GCGTAGGTTGCAGGTGAGAAA
Band lengths:
300-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]