HsaEX1046016 @ hg38
Exon Skipping
Gene
ENSG00000140015 | KCNH5
Description
potassium voltage-gated channel subfamily H member 5 [Source:HGNC Symbol;Acc:HGNC:6254]
Coordinates
chr14:62779728-62849852:-
Coord C1 exon
chr14:62849653-62849852
Coord A exon
chr14:62802329-62802581
Coord C2 exon
chr14:62779728-62779924
Length
253 bp
Sequences
Splice sites
3' ss Seq
TCATCTCTCACCTTCTTTAGGTC
3' ss Score
10.54
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACAACAATTTTCCAGCAAATGTATGCCAACACCAACCGATACCATGAGATGCTGAATAATGTACGGGACTTCCTAAAACTCTATCAGGTCCCAAAAGGCCTTAGTGAGCGAGTCATGGATTATATTGTCTCAACATGGTCCATGTCAAAAGGCATTGATACAGAAAAG
Seq A exon
GTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGATATCTGTGTTCATCTAAACCGGAAGGTTTTTAATGAACATCCTGCTTTTCGATTGGCCAGCGATGGGTGTCTGCGCGCCTTGGCGGTAGAGTTCCAAACCATTCACTGTGCTCCCGGGGACCTCATTTACCATGCTGGAGAAAGTGTGGATGCCCTCTGCTTTGTGGTGTCAGGATCCTTGGAAGTCATCCAGGATGATGAGGTGGTGGCTATTTTAG
Seq C2 exon
GGAAGGGTGATGTATTTGGAGACATCTTCTGGAAGGAAACCACCCTTGCCCATGCATGTGCGAACGTCCGGGCACTGACGTACTGTGACCTACACATCATCAAGCGGGAAGCCTTGCTCAAAGTCCTGGACTTTTATACAGCTTTTGCAAACTCCTTCTCAAGGAATCTCACTCTTACTTGCAATCTGAGGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140015-'16-19,'16-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.6=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACACCAACCGATACCAT
R:
AGAAGGAGTTTGCAAAAGCTGT
Band lengths:
303-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains