GgaEX1031293 @ galGal4
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXK7]
Coordinates
chr5:53505222-53527019:+
Coord C1 exon
chr5:53505222-53505421
Coord A exon
chr5:53516735-53516987
Coord C2 exon
chr5:53526823-53527019
Length
253 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTCTTTCATTCAGGTT
3' ss Score
11.93
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTCACCACTATTTTCCAGCAGATGTATGCCAACACCAACCGATACCATGAAATGCTGAACAATGTGAGAGATTTCCTAAAATTATATCAAGTCCCAAAAGGCCTTAGTGAAAGAGTCATGGATTATATTGTCTCAACCTGGTCCATGTCGAAAGGAATTGACACAGAGAAG
Seq A exon
GTTCTCTCGATTTGCCCAAAGGACATGAGAGCAGATATTTGTGTGCACCTAAACCGAAAAGTTTTTAATGAGCACCCTGCCTTCCGGCTGGCCAGCGATGGCTGCCTGCGAGCCCTGGCCGTGGAGTTTCAGACGATCCATTGCGCCCCGGGGGACCTCATCTATCACGCTGGGGAGAGTGTTGATGCTCTTTGCTTTGTGGTCTCAGGATCCCTAGAAGTCATCCAGGACGACGAGGTGGTGGCTATTTTAG
Seq C2 exon
GTAAAGGTGATGTGTTCGGTGATATCTTCTGGAAGGAAACCAGTCTAGCCCATGCATGTGCCAATGTACGGGCTCTGACTTACTGCGATTTACATATTATTAAACGAGAAGCCTTGCTTAAAGTGTTGGACTTTTACACTGCTTTTGCAAACTCCTTCTCAAGGAACCTCACGCTCACCTGTAATTTGAGGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'8-17,'8-15,11-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.5=14.9)
A:
PF078836=Cupin_2=PU(65.1=48.2),PF0002724=cNMP_binding=PU(45.5=47.1)
C2:
PF078836=Cupin_2=PD(33.3=31.8),PF0002724=cNMP_binding=PD(53.4=71.2)
Main Skipping Isoform:
ENSGALT00000019345fB8617
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACACCAACCGATACCAT
R:
AGGAGTTTGCAAAAGCAGTGT
Band lengths:
300-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]