GgaEX1031293 @ galGal3
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
NA
Coordinates
chr5:56139245-56164606:+
Coord C1 exon
chr5:56139245-56139444
Coord A exon
chr5:56150758-56151010
Coord C2 exon
chr5:56164410-56164606
Length
253 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTCTTTCATTCAGGTT
3' ss Score
11.93
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTCACCACTATTTTCCAGCAGATGTATGCCAACACCAACCGATACCATGAAATGCTGAACAATGTGAGAGATTTCCTAAAATTATATCAAGTCCCAAAAGGCCTTAGTGAAAGAGTCATGGATTATATTGTCTCAACCTGGTCCATGTCGAAAGGAATTGACACAGAGAAG
Seq A exon
GTTCTCTCGATTTGCCCAAAGGACATGAGAGCAGATATTTGTGTGCACCTAAACCGAAAAGTTTTTAATGAGCACCCTGCCTTCCGGCTGGCCAGCGATGGCTGCCTGCGAGCCCTGGCCGTGGAGTTTCAGACGATCCATTGCGCCCCGGGGGACCTCATCTATCACGCTGGGGAGAGTGTTGATGCTCTTTGCTTTGTGGTCTCAGGATCCCTAGAAGTCATCCAGGACGACGAGGTGGTGGCTATTTTAG
Seq C2 exon
GTAAAGGTGATGTGTTCGGTGATATCTTCTGGAAGGAAACCAGTCTAGCCCATGCATGTGCCAATGTACGGGCTCTGACTTACTGCGATTTACATATTATTAAACGAGAAGCCTTGCTTAAAGTGTTGGACTTTTACACTGCTTTTGCAAACTCCTTCTCAAGGAACCTCACGCTCACCTGTAATTTGAGGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858-'7-11,'7-10,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.5=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.1),PF078836=Cupin_2=PU(65.1=48.2)
C2:
PF0002724=cNMP_binding=PD(53.4=71.2),PF078836=Cupin_2=PD(33.3=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACACCAACCGATACCAT
R:
AGGAGTTTGCAAAAGCAGTGT
Band lengths:
300-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]