RnoEX0046040 @ rn6
Exon Skipping
Gene
ENSRNOG00000009542 | Kcnh5
Description
potassium voltage-gated channel subfamily H member 5 [Source:RGD Symbol;Acc:621417]
Coordinates
chr6:97938096-98070966:-
Coord C1 exon
chr6:98070540-98070966
Coord A exon
chr6:97977321-97977520
Coord C2 exon
chr6:97938096-97938348
Length
200 bp
Sequences
Splice sites
3' ss Seq
TATCATTTCTTTTATTTCAGCTC
3' ss Score
9.39
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGAATCAGCAGTCTCTTCAGCTCTTTAAAGGTGGTACGCCTCTTACGCCTGGGCCGTGTTGCTAGGAAACTGGACCATTACCTGGAATATGGAGCAGCGGTCCTTGTGCTCCTGGTATGTGTGTTTGGACTGGTTGCCCACTGGCTGGCCTGCATCTGGTACAGCATTGGAGACTATGAGGTCATTGATGAAGTCACCAACACCATTCAAATAGACAGCTGGCTCTACCAGTTGGCCTTGAGCATTGGGACTCCATATCGCTACAATACCAGTGCAGGGATCTGGGAAGGAGGACCCAGCAAGGACTCCCTGTATGTGTCCTCCCTCTACTTCACCATGACGAGCCTTACAACCATAGGATTTGGAAACATAGCTCCGACCACAGACGTGGAGAAGATGTTCTCAGTGGCCATGATGATGGTCGGCT
Seq A exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGTTACCATGAGATGCTGAACAATGTTCGAGATTTCCTGAAATTATATCAGGTCCCGAAAGGCCTTAGTGAACGAGTCATGGATTACATTGTGTCAACGTGGTCAATGTCAAAAGGCATCGACACAGAGAAG
Seq C2 exon
GTCCTCTCCATCTGCCCCAAGGACATGAGAGCTGACATCTGTGTTCATCTGAACCGGAAGGTTTTTAATGAACATCCTGCATTCCGATTGGCCAGCGATGGATGTCTGCGTGCCTTGGCAGTGGAGTTCCAAACCATTCACTGTGCTCCTGGGGACCTGATTTACCATGCTGGAGAGAGTGTGGACGCCCTCTGCTTTGTGGTGTCAGGGTCCTTGGAGGTTATCCAGGATGAGGAGGTGGTGGCTATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009542-'11-8,'11-7,12-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(64.8=100)
A:
PF0052026=Ion_trans=PD(4.6=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCAGTTGGCCTTGAGC
R:
GCCAATCGGAATGCAGGATGT
Band lengths:
297-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]