GgaEX1031294 @ galGal4
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXK7]
Coordinates
chr5:53464400-53516987:+
Coord C1 exon
chr5:53464400-53464829
Coord A exon
chr5:53505222-53505421
Coord C2 exon
chr5:53516735-53516987
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTTGTGACTTTTTTTTCCAGCTC
3' ss Score
9.28
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGATCAGTAGCCTCTTCAGTTCTCTAAAAGTGGTGCGTCTTCTCCGACTTGGTCGAGTTGCCAGAAAGTTGGACCATTATTTGGAATATGGTGCTGCCGTACTGGTACTGCTGGTGTGTGTGTTTGGACTGGTGGCTCACTGGCTAGCCTGCATATGGTACAGCATCGGGGACTATGAAGTTATAGACGAAGTCACTAACACAATCAAAACAGATAGCTGGCTCTACCAGTTGGCACTGAGTATTGGGACACCATATCGATACAACACCACTGGCTCAGGGCAGTGGGAAGGAGGACCCAGTAAAGACTCCTTGTACATATCCTCTCTCTACTTTACCATGACAAGCCTTACAACGATAGGATTTGGAAACATAGCACCAACCACTGATGGGGAGAAGATTTTTTCAGTGGCCATGATGATGGTTGGCT
Seq A exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTCACCACTATTTTCCAGCAGATGTATGCCAACACCAACCGATACCATGAAATGCTGAACAATGTGAGAGATTTCCTAAAATTATATCAAGTCCCAAAAGGCCTTAGTGAAAGAGTCATGGATTATATTGTCTCAACCTGGTCCATGTCGAAAGGAATTGACACAGAGAAG
Seq C2 exon
GTTCTCTCGATTTGCCCAAAGGACATGAGAGCAGATATTTGTGTGCACCTAAACCGAAAAGTTTTTAATGAGCACCCTGCCTTCCGGCTGGCCAGCGATGGCTGCCTGCGAGCCCTGGCCGTGGAGTTTCAGACGATCCATTGCGCCCCGGGGGACCTCATCTATCACGCTGGGGAGAGTGTTGATGCTCTTTGCTTTGTGGTCTCAGGATCCCTAGAAGTCATCCAGGACGACGAGGTGGTGGCTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858_MULTIEX1-1/5=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(65.0=100)
A:
PF0052026=Ion_trans=PD(4.5=14.9)
C2:
PF078836=Cupin_2=PU(65.1=48.2),PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAGCATCGGGGACTAT
R:
GCTCTCATGTCCTTTGGGCAA
Band lengths:
306-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]