BtaEX6054417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011379 | KCNH5
Description
Bos taurus potassium voltage-gated channel, subfamily H (eag-related), member 5 (KCNH5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192989]
Coordinates
chr10:75336245-75537044:-
Coord C1 exon
chr10:75536618-75537044
Coord A exon
chr10:75404740-75404939
Coord C2 exon
chr10:75336245-75336497
Length
200 bp
Sequences
Splice sites
3' ss Seq
CATCATTTCTTCTCTTTCAGCTC
3' ss Score
10.81
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGAATCAGCAGTCTCTTCAGTTCTTTAAAAGTGGTGCGTCTCTTGAGACTGGGCCGTGTTGCCAGGAAATTGGACCATTACCTGGAGTATGGAGCAGCTGTCCTTGTGCTCCTGGTTTGTGTGTTTGGACTAGTTGCTCACTGGCTGGCCTGCATATGGTACAGCATTGGGGACTACGAGGTCATCGATGAAGTCACGAACACCATCCAAATAGACAGTTGGCTCTACCAGCTGGCCTTGAGCATTGGGACTCCGTATCGATACAATACCAGTGCAGGGATATGGGAAGGAGGACCCAGCAAGGATTCCCTGTATGTGTCCTCTCTCTACTTTACCATGACAAGCCTTACAACCATAGGATTTGGAAACATAGCTCCTACCACAGACGTGGAGAAGATGTTTTCAGTGGCCATGATGATGGTTGGCT
Seq A exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGATACCATGAGATGCTGAATAATGTACGGGACTTTCTGAAACTCTATCAGGTCCCCAAAGGCCTTAGTGAACGAGTCATGGATTATATTGTCTCAACATGGTCCATGTCAAAAGGCATCGACACAGAAAAG
Seq C2 exon
GTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGATATCTGTGTTCATCTAAACCGGAAGGTTTTTAATGAACATCCTGCTTTTCGATTGGCCAGCGATGGGTGTCTGCGAGCCTTGGCAGTAGAATTCCAAACTATTCACTGTGCTCCTGGGGACCTCATTTACCATGCTGGAGAAAGTGTGGATGCCCTCTGCTTTGTGGTGTCAGGATCCTTGGAAGTCATCCAGGATGATGAGGTGGTGGCTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011379-'8-16,'8-14,10-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(64.8=100)
A:
PF0052026=Ion_trans=PD(4.6=14.9)
C2:
PF078836=Cupin_2=PU(64.1=48.2),PF0002724=cNMP_binding=PU(45.5=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATGGGAAGGAGGACCC
R:
TCCCCAGGAGCACAGTGAATA
Band lengths:
306-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]