MmuEX0025042 @ mm9
Exon Skipping
Gene
ENSMUSG00000034402 | Kcnh5
Description
potassium voltage-gated channel, subfamily H (eag-related), member 5 [Source:MGI Symbol;Acc:MGI:3584508]
Coordinates
chr12:76077458-76188818:-
Coord C1 exon
chr12:76188392-76188818
Coord A exon
chr12:76108587-76108786
Coord C2 exon
chr12:76077458-76077710
Length
200 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTCTTTTATTTCAGCTC
3' ss Score
8.97
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGAATCAGCAGTCTCTTCAGCTCTTTAAAGGTGGTGCGCCTTTTACGCCTGGGCCGTGTTGCTAGGAAACTGGACCATTACCTGGAATATGGAGCAGCGGTCCTTGTGCTCCTGGTATGTGTGTTTGGACTGGTGGCTCACTGGCTGGCTTGCATCTGGTACAGCATTGGAGACTATGAGGTCATTGATGAAGTCACCAACACCATTCAAATAGACAGCTGGCTCTACCAGTTGGCCTTGAGCATTGGGACCCCATATCGCTACAATACGAGTGCAGGGATCTGGGAAGGAGGACCCAGCAAGGACTCCCTGTATGTGTCCTCCCTCTACTTCACCATGACGAGCCTTACAACCATAGGATTTGGAAACATAGCTCCGACCACAGACGTGGAGAAGATGTTCTCAGTGGCCATGATGATGGTCGGCT
Seq A exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTTACCACAATTTTCCAGCAAATGTATGCCAACACCAACCGTTACCATGAGATGCTGAATAATGTTCGAGATTTCCTGAAATTATATCAGGTCCCAAAAGGCCTTAGTGAACGAGTGATGGATTATATTGTCTCAACATGGTCAATGTCAAAAGGCATCGACACAGAGAAG
Seq C2 exon
GTCCTCTCCATCTGTCCCAAGGACATGAGAGCTGACATCTGTGTTCATCTGAACCGGAAGGTTTTTAATGAACATCCTGCATTCCGATTGGCCAGCGATGGATGTCTGCGTGCCTTGGCAGTGGAGTTCCAAACCATTCACTGTGCTCCTGGGGACCTGATTTACCATGCTGGAGAGAGTGTGGATGCCCTCTGCTTTGTGGTGTCCGGGTCCTTGGAAGTTATCCAGGATGAGGAGGTGGTGGCCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034402-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(64.8=100)
A:
PF0052026=Ion_trans=PD(4.6=14.9)
C2:
PF0002724=cNMP_binding=PU(45.5=47.1),PF078836=Cupin_2=PU(64.1=48.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCAGTTGGCCTTGAGC
R:
GCCAATCGGAATGCAGGATGT
Band lengths:
297-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: