MmuEX6034661 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16463084-16698123:-
Coord C1 exon
chr8:16697916-16698123
Coord A exon
chr8:16501280-16501392
Coord C2 exon
chr8:16463084-16463161
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTCTCTCCTCCAGGCT
3' ss Score
12.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CTGAGGGAGCCTGCGGGGGAACCCTAAGGGGAACCAGCGGTTCCATATCCAGCCCTCACTTCCCCTCTGAGTATGACAATAATGCCGACTGCACGTGGACCATCTTGGCTGAGCCTGGGGACACCATTGCTCTTGTTTTTACTGACTTCCAGCTGGAGGAAGGATACGACTTCTTAGAGATCAGCGGGACAGAAGCACCATCCATATG
Seq A exon
GCTCACAGGCATGAACCTCCCATCCCCTGTGATCAGCAGCAAGAACTGGCTCCGTCTCCACTTTACATCTGACAGCAATCACCGACGTAAAGGGTTCAATGCTCAGTTCCAAG
Seq C2 exon
TGAAAAAGGCAATTGAGCTGAAGTCGAGAGGAGTCAAGATGCTACCAAGCAAGGACAGCAGCCACAAAAACTCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'14-29,'14-27,19-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCCATATCCAGCCCTCA
R:
AGTTTTTGTGGCTGCTGTCCT
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types