GgaEX1017824 @ galGal4
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr3:89290782-89421662:+
Coord C1 exon
chr3:89290782-89290989
Coord A exon
chr3:89400011-89400123
Coord C2 exon
chr3:89421585-89421662
Length
113 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTTATTTTTCCAGGCT
3' ss Score
7.6
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTGAAGGAGCATGTGGAGGGACACTACGTGGGACAAGTGGAACTATTTCAAGTCCTCACTTCCCTTCAGAGTACGAAAATAATGCTGACTGCACCTGGACCATATTGGCTGAACCAGGAGATACTATTGCTTTGATCTTTACTGACTTCCAGTTGGAAGAAGGATACGACTTCTTAGAGATCAGTGGAACAGAAGCACCTTCAATATG
Seq A exon
GCTCACTGGTATGAATCTACCCTCCCCTGTTATCAGCAGTAAGAACTGGTTACGACTTCATTTTACATCTGACAGCAACCACCGGCGAAAGGGATTTAATGCTCAGTTTCAAG
Seq C2 exon
TGAAAAAAGCAATCGAACTGAAATCAAGAGGAGTCAAGATGTTGCCCAGCAAAGACAGTAATCACAAAAATTCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'5-12,'5-10,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGTGGAGGGACACTA
R:
TGCTGGGCAACATCTTGACTC
Band lengths:
254-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]