DreEX6073779 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36835358-36916203:-
Coord C1 exon
chr19:36915996-36916203
Coord A exon
chr19:36839840-36839952
Coord C2 exon
chr19:36835358-36835435
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTAATATTACAGGTT
3' ss Score
9.1
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CGGATGATGGTTGTGGTGGCACTTTACGGGGTCAAAGCGGTGTTATTACCAGTCCAAATTACCCCCAGGAGTACAACAACAACGCAGACTGCACCTGGACCATCCTAGCCGAACCAGGAGACACCATCGCTCTGGTCTTCTCCGACTTTCAATTGGAAGAAGACTATGATGTACTGGAGATAACCGGCACAGAAGGATCATCTCAGTG
Seq A exon
GTTTACTGGTCCAAACCTGCCATCTCCCATCATCAGCAGCAAGAACTGGCTGAGACTCCACTTCACATCAGATGGAAACCACAAACTGAGAGGCTTCAGTGCTCAGTATCAAG
Seq C2 exon
TGAAGAAGATGACAGAGCTGAAGTCCAGAGGGGTGAAGATGCTGCCAAGTAAAGACAACCACAGCAAGATATCAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'5-12,'5-6,6-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.026 C2=0.389
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGTTGTGGTGGCACT
R:
CAGCATCTTCACCCCTCTGGA
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]