RnoEX6023446 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146396510-146479337:+
Coord C1 exon
chr5:146396510-146396717
Coord A exon
chr5:146462136-146462248
Coord C2 exon
chr5:146479260-146479337
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCCTGTCCCCCCAGGTT
3' ss Score
12.91
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CGGATGACGCCTGTGGCGGGACCCTGCGCGGCCAGAGTGGCATCATCTCCAGCCCCCACTTTCCTGCTGAGTATCACAACAATGCGGACTGCACATGGACTATCCTGGCTGAGCTTGGGGACACAATCGCCCTGGTGTTTATTGACTTCCAGTTAGAGGATGGATATGACTTCCTGGAGGTCACAGGGACCGAAGGCTCCTCTCTCTG
Seq A exon
GTTTACCGGAGCCAGCCTCCCAGCGCCTGTCATCAGCAGCAAGAACTGGCTGCGGCTACACTTCACATCAGATGGTAACCACCGGCAGCGTGGCTTCAGCGCCCAGTACCAAG
Seq C2 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACGTCAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'1-6,'1-5,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.383
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGGCATCATCTCCAGC
R:
TCTGGTTATTGTCCTTGCTGGG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]