GgaEX1017851 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5001869-5034319:+
Coord C1 exon
chr23:5001869-5002076
Coord A exon
chr23:5030301-5030413
Coord C2 exon
chr23:5034242-5034319
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTGGTTTCTTGCAGGTT
3' ss Score
9.17
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGATGATGCTTGCGGAGGGACGCTGAGGGGGCAGAGCGGGATTATCTCCAGCCCACACTTTCCTTTGGAGTATGGCAATAATGCAGACTGCACGTGGACTATTCTCGCTGAGCCCGGAGACACGATTGCCCTGGTGTTCATGGATTTTCAGCTGGAAGATGGATACGACGTTTTAGAGGTTGCTGGAACGGAGGGATCTTCGCTCTG
Seq A exon
GTTCACTGGGATGAATCTGCCCGCCCCGGTTATCAGCAGTAAAAATTGGCTGCGGCTTCACTTCACATCTGATGGCAACCACAGGCAGAAGGGCTTCAGCGCTCAGTACCAAG
Seq C2 exon
TCAAAAAGCAAATGGAACTGAAGTCCAGAGGGGTGAAGCTGATGCCAAGCAAGAACAGTAACCAGAAGACATCAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'4-12,'4-6,5-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.444
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGATGCTTGCGGAGGG
R:
ACCCCTCTGGACTTCAGTTCC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]