MmuEX6096226 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128209717-128291456:+
Coord C1 exon
chr4:128209717-128209924
Coord A exon
chr4:128277151-128277263
Coord C2 exon
chr4:128291379-128291456
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCCCTGTCCTCCCAGGTT
3' ss Score
11.25
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGATGACGCCTGTGGAGGGACCCTGCGGGGCCAGAGTGGAATCATCTCCAGTCCCCACTTTCCTGCCGAGTATCACAACAATGCTGACTGCACATGGACCATCCTGGCTGAACTTGGAGACACCATCGCCCTGGTTTTTATTGACTTCCAGCTAGAGGATGGCTATGACTTCCTGGAGGTCACGGGGACCGAAGGCTCCTCTCTCTG
Seq A exon
GTTTACCGGAGCCAGCCTCCCAGCCCCTGTCATCAGCAGCAAGAACTGGCTGCGGCTCCACTTCACATCAGATGGTAACCACCGGCAGCGAGGCTTCAGCGCCCAGTACCAAG
Seq C2 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACATCTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'7-10,'7-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(63.7=92.9)
A:
PF0043115=CUB=PD(35.3=92.3)
C2:
NO
Main Skipping Isoform:
ENSMUST00000184063fB8285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCAGAGTGGAATCATCT
R:
TGGTTATTGTCCTTGCTGGGC
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types