MmuEX6035506 @ mm9
Exon Skipping
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46358830-46361508:-
Coord C1 exon
chr8:46361396-46361508
Coord A exon
chr8:46360762-46360930
Coord C2 exon
chr8:46358830-46359005
Length
169 bp
Sequences
Splice sites
3' ss Seq
CACATCTCAACACTTTTCAGACT
3' ss Score
5.47
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGTAAATGTTCCTTAAGGTTATCCACAGATGGCTCCCCAACTAGGATCACCTATGGCATGCAGGGGAGCTCCGGTTATTCTCTGAGATTGTGTAAACTTGTGGACAGCCCTG
Seq A exon
ACTGTACAACAAAAATAAATGCACGTATTGTGGGAGGAACAAACGCTTCTTTAGGGGAGTGGCCATGGCAGGTCAGCCTGCAAGTGAAGCTGGTATCTCAGACCCATTTGTGTGGAGGGTCCATCATTGGTCGCCAATGGGTACTGACAGCTGCCCATTGCTTTGATGG
Seq C2 exon
AATTCCCTATCCAGATGTGTGGCGTATATATGGCGGAATTCTTAGTCTGTCCGAGATTACGAAAGAAACGCCTTCCTCGAGAATAAAGGAGCTTATTATTCATCAGGAATACAAAGTCTCAGAAGGCAATTATGATATTGCCTTAATAAAGCTTCAGACGCCCCTGAATTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=79.5)
A:
PF0008921=Trypsin=PU(20.3=82.5)
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCTCCCCAACTAGGA
R:
TCAGGGGCGTCTGAAGCTTTA
Band lengths:
254-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: