RnoEX6055599 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50168469-50171158:+
Coord C1 exon
chr16:50168469-50168581
Coord A exon
chr16:50169044-50169212
Coord C2 exon
chr16:50170983-50171158
Length
169 bp
Sequences
Splice sites
3' ss Seq
CACATCTCAACACTTTTCAGACT
3' ss Score
5.47
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTGTAAATGTTCCTTAAGGTTATCCACGGATGGCTCTCCAACTAGGATCACCTATGAGGCACAGGGGAGCTCTGGTTATTCTCTGAGACTGTGTAAAGTTGTGGAGAGCTCTG
Seq A exon
ACTGTACGACAAAAATAAATGCACGTATTGTGGGAGGAACAAACTCTTCTTTAGGAGAGTGGCCATGGCAGGTCAGCCTGCAAGTAAAGTTGGTTTCTCAGAATCATATGTGTGGAGGGTCCATCATTGGACGCCAATGGATACTGACGGCTGCCCATTGCTTTGATGG
Seq C2 exon
GATTCCCTATCCAGACGTGTGGCGTATATATGGCGGGATTCTTAATCTGTCAGAGATTACAAACAAAACGCCTTTCTCAAGTATAAAGGAGCTTATTATTCATCAGAAATACAAAATGTCAGAAGGCAGTTACGATATTGCCTTAATAAAGCTTCAGACACCGTTGAATTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=79.5)
A:
PF0008921=Trypsin=PU(20.3=82.5)
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCACGGATGGCTCTCCA
R:
CGGTGTCTGAAGCTTTATTAAGGC
Band lengths:
257-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]