GgaEX6035322 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63224163-63226792:+
Coord C1 exon
chr4:63224163-63224278
Coord A exon
chr4:63224610-63224784
Coord C2 exon
chr4:63226617-63226792
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTTCAATTATTTCTGTAGTAT
3' ss Score
5.57
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAGTGTGAGTGTCATCTAAGAATGTCCTCAAATGGATCTCCAGTGGAAATACAACACGGTCCAGGAAGGATCTCTGGATACTCACTAAGACTATGTAAAAAAAAGGCCAGTACTG
Seq A exon
TATGTATGCAGCATTCTTCAAGAAATATTAGGATAATTGGAGGGACGGACTCTTCCCCTGGTGAATGGCCTTGGCAAGTGAGCTTACATGTGAAGCTATCTCGCCAGAGACACCTCTGTGGAGGCTCTATCATCAGTAACCAGTGGATCCTTACAGCTGCCCACTGTTTCATGAG
Seq C2 exon
TGTTCAGAACCCCAACATTTGGCGTGTTTATGCTGGTGTTTTAAAACAATCAGAAATAAATGAGAATACACCTTTCTTCAGAGTGGAAGAGATTATTATTCATCCTCAGTATAATTCTGCACAGACTGGATATGACATTGCTTTACTGAAGCTTGATAAGGCTATGAATTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'8-12,'8-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(37.6=80.0)
A:
PF0008921=Trypsin=PU(20.3=79.7)
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAAATACAACACGGTCCA
R:
TCATAGCCTTATCAAGCTTCAGT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]