RnoEX6055609 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50195678-50198555:+
Coord C1 exon
chr16:50195678-50195784
Coord A exon
chr16:50197304-50197463
Coord C2 exon
chr16:50198380-50198555
Length
160 bp
Sequences
Splice sites
3' ss Seq
GTGCACTCTCTCTGTTGTAGTAT
3' ss Score
7.99
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGGCAGATGTTACTTAAAGCTTTCTTCAAACGGATCTCCAACTAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACACGCTGAGGCTGTGCAAAATGGATAATG
Seq A exon
TATGCACAACCAAAATCAGGCCCAGGGTGTTCGGAGGAGCTGCGTCTGTTCACGGCGAGTGGCCATGGCAGGTGACCCTGCACACCACCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCGGTGGATATTGACAGCGGCTCATTGTTTCTCTGG
Seq C2 exon
GACAGAGACACCTAAAACTCTGCGTGTCTACGGTGGTATTGTAAATCAATCAGAAATAAATGAAGATACCACTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAATATACATCGGCAGAAAGTGGGTTTGACATTGCCCTCTTAAAACTGGAACCGGCCATGAATTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'14-19,'14-17,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.017
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=83.8)
A:
PF0008921=Trypsin=PU(19.3=81.5)
C2:
PF0008921=Trypsin=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTCTTCAAACGGATCTCCA
R:
TTCATGGCCGGTTCCAGTTTT
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]