BtaEX6106621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15362611-15367122:+
Coord C1 exon
chr27:15362611-15362717
Coord A exon
chr27:15365705-15365873
Coord C2 exon
chr27:15366947-15367122
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTGCAATCCTTCTGTCGTAGTGT
3' ss Score
4.91
5' ss Seq
CGAGTTCAG
5' ss Score
-15.95
Exon sequences
Seq C1 exon
GGGTAAATGCTACTTAAAACTTTCTGCAAATGGATCTCCAACTAAAATACTTCATGGGACAGGAAGCATCTCTGGATACACGTTAAGGTTATGTAAAATGGATAATG
Seq A exon
TGTGTACAACCAAAATCAAGACCAGAATTGTAGGAGGAACCCAGTCTGTTCACGGAGAGTGGCCGTGGCAGATAACTCTGCACGTGACATCACCCACCCAGAGACACCTGTGTGGAGGCGCCATCATCGGAAACCAGTGGATATTAACAGCTGCTCACTGTTTCAACGA
Seq C2 exon
GGTCAAGTCACCTAATGTGTTGCGTGTCTATAGCGGCATTTTGAATCAATCAGAAATAAAAGAGGATACATCTTTCTTTGGGGTTCAAGAAATAATAATTCATGATCAATATGAAAAGGCAGAAAGTGGATATGACATTGCCTTGTTGAAACTAGAAACGGCAATGAATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572-'10-13,'10-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=83.8)
A:
PF0008921=Trypsin=PU(20.3=82.5)
C2:
PF0008921=Trypsin=FE(25.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTTCTGCAAATGGATCTCC
R:
GCCGTTTCTAGTTTCAACAAGGC
Band lengths:
253-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]