MmuEX6040210 @ mm10
Exon Skipping
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29124666-29183641:-
Coord C1 exon
chr14:29183563-29183641
Coord A exon
chr14:29170504-29170637
Coord C2 exon
chr14:29124666-29124683
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCTCGTCCTTCTTTTGGCAGGAT
3' ss Score
9.69
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTTCGAATCTTTACTTACCTCATTGGACGGGAGGCTGCTTTTGCCGACAATCTCAAGTGGATGGCTTGTGCTAACAAAG
Seq A exon
GATTTTTCACCCAGATCTCCACCTTGGCTGATGTGCAGGAAAATGTCATGGAATACCTCCATGTGCTTAGCCGACCTAAAGTCATTGACCAGGAGCATGATGTGGTGTGGACCGAAGCGTACATTGACAGCACC
Seq C2 exon
CTCCCTCAGGCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991-'33-40,'33-39,34-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(14.4=100)
A:
PF135191=VWA_2=PD(10.6=42.2),PF0274313=Cache_1=PU(8.2=17.8)
C2:
PF0274313=Cache_1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types