MmuEX6041694 @ mm10
Exon Skipping
Gene
ENSMUSG00000015443 | Gzmn
Description
granzyme N [Source:MGI Symbol;Acc:MGI:2675494]
Coordinates
chr14:56166776-56167970:-
Coord C1 exon
chr14:56167820-56167970
Coord A exon
chr14:56167240-56167375
Coord C2 exon
chr14:56166776-56167036
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTACAATGCTCTCTCCACAGCTC
3' ss Score
9.12
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGAGGTCATCGGGGGCCATGAGGTCAAGCCCCACTCTCGCCCTTACATGGCATTAGTTGTGTTTCTGAAAGTTAATGGGATTGGAAGTTCCTGTGGCGGCTTCCTGGTTCAAGACTACTTTGTGCTGACGGCTGCTCACTGCATTGGAAG
Seq A exon
CTCAATGACAGTCACACTGGGGGCCCACAACCTCCGTGCACAGGAGGAGACTCAGCAGATTATTCCTGTGAATAAAGCTCTTCCCCACCCAGACTATAATCCTCTGGATCACACCAATGACATCATGCTATTAAAG
Seq C2 exon
CTGGAGAGTAAGGCCAAGGGGACTAGAGATGTGAGGCCCCTCAAGTTGCCTGGGCCCAAAGACAAGGTGAATCCAGGGGATGTGTGCAGTGTGGCTGGCTGGGGGAAAACGTCCATCAATACCACTGAAGGATCTGCTCTCTTAGAAGAGGCTGAATTGATCATCCAGGAGAACAAGGAATGCAAAAAACAATTCCGTCACTATTCCAAAATCACAGAGATTTGTGCTGGAGACCCAAACAAAATAGAGGCTCCGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015443-'3-8,'3-6,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.065 C2=0.172
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.7=94.1)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGTCAAGCCCCACTCTC
R:
TTGATGGACGTTTTCCCCCAG
Band lengths:
252-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types