RnoEX6051850 @ rn6
Exon Skipping
Gene
ENSRNOG00000029860 | Gzmn
Description
granzyme N [Source:RGD Symbol;Acc:1597226]
Coordinates
chr15:35151494-35152698:-
Coord C1 exon
chr15:35152548-35152698
Coord A exon
chr15:35151967-35152102
Coord C2 exon
chr15:35151494-35151754
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGCTCTCTCCACAGCTC
3' ss Score
11.8
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AGGAGGTCATCGGGGGCCATGAGGTCCCGCCGCATTCCCGCCCTTACATGGCATTAATTTCATTTCTGAAAGTCGACGGCAACAGAAGCTCTTGCGGAGGCTTCCTGGTGCGAGACTACTTTGTGCTGACGGCTGCTCACTGCACTGGAAG
Seq A exon
CTCAATGACAGTCATACTAGGGGCCCACAACCTCCATGAGCAGGAGAAAACTCAGCAGATCATCCCTGTGGAAAAAGCTATTCCCCACCTGGGCTATAATCCTCTGAACCACTCCAATGACATCATGCTATTAAAG
Seq C2 exon
TTGGAGAGTAAGGCCAAGAGGACTAAAGCTGTGAGGACCCTCAGGTTGCCTGGGCGCAAAGACCACGTAAATCCAGGGGATGTTTGTGGTGTGGCTGGCTGGGGAAAAACATCCATCAATGCCAATAAAGGATCTGCCCTGTTAGAGGAGGCTGAACTGATCATCCAGGGGGACGCGGAATGCAAAAAACGCTTCCGTCACTATTCCGAAACCACAGAGATTTGTGCTGGAGACCCAAACGAAATAGAGGCTCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029860-'1-4,'1-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.022 C2=0.161
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.7=94.1)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTTTGTGCTGACGGCTG
R:
CGGAATAGTGACGGAAGCGTT
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]