MmuEX6050459 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86897940-86901700:-
Coord C1 exon
chr10:86901572-86901700
Coord A exon
chr10:86899792-86899848
Coord C2 exon
chr10:86897940-86898032
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCCACTTTTTTTTACCAAGGGG
3' ss Score
4.48
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CTGTATGTAAATGAAGCTCCAATAAACTACACCAATGTGGCCACTGACAAGGGAGTGATCCATGGTCTGGAGAAAGTTCTGGAAATCAAGAAGAATAGGTGTGACAATAATGACACCATTATTGTGAGA
Seq A exon
GGGAAGTGTGGAAAGTGTTCCCAGCAAACACTCTGCCCGCTCGAGACAAAACCACTT
Seq C2 exon
AGTGAGACGAGGAAATGCATCTATTCCGTTTACTTCATGGGGAAGAGATCCATTTTCATCGGGTGCCAGCTACAGTGTGTGAGAACCATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'43-52,'43-51,45-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(23.3=65.1)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000035288fB17541
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGGAGAAAGTTCTGGA
R:
CTGGCACCCGATGAAAATGGA
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types