MmuEX6050459 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86360685-86364445:-
Coord C1 exon
chr10:86364317-86364445
Coord A exon
chr10:86362537-86362593
Coord C2 exon
chr10:86360685-86360777
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCCACTTTTTTTTACCAAGGGG
3' ss Score
4.48
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CTGTATGTAAATGAAGCTCCAATAAACTACACCAATGTGGCCACTGACAAGGGAGTGATCCATGGTCTGGAGAAAGTTCTGGAAATCAAGAAGAATAGGTGTGACAATAATGACACCATTATTGTGAGA
Seq A exon
GGGAAGTGTGGAAAGTGTTCCCAGCAAACACTCTGCCCGCTCGAGACAAAACCACTT
Seq C2 exon
AGTGAGACGAGGAAATGCATCTATTCCGTTTACTTCATGGGGAAGAGATCCATTTTCATCGGGTGCCAGCTACAGTGTGTGAGAACCATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(23.3=65.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGGAGAAAGTTCTGGA
R:
CTGGCACCCGATGAAAATGGA
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: