RnoEX0086550 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27424225-27427920:-
Coord C1 exon
chr7:27427792-27427920
Coord A exon
chr7:27426194-27426250
Coord C2 exon
chr7:27424225-27424317
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTACCCTTTTTACCAAGGGG
3' ss Score
4.76
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CTGTATGTAAATGAAGCTCCAATAAACTACACCAATGTGGCCACTGACAAAGGAGTGATCCATGGTCTGGAGAAAGTTCTGGAAATTCAGAAGAACAGATGTGACAATAATGACACCATTATTGTGAGA
Seq A exon
GGGGAGTGTGGAAAGTGTTCCCAGCAAGCCCCCTGCCCACTCGAGACAAAACCACTT
Seq C2 exon
AGAGAGACGAGGAAATGCATCTATTCCATCTACTTCATGGGGAAGAGATCCGTATTCATTGGGTGCCAGCCACAGTGTGTGAGAACCATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'42-43,'42-41,43-43
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(23.3=65.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGGAGAAAGTTCTGGA
R:
TGGCTGGCACCCAATGAATAC
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]