RnoEX0086551 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27422609-27426250:-
Coord C1 exon
chr7:27426194-27426250
Coord A exon
chr7:27424225-27424317
Coord C2 exon
chr7:27422609-27422804
Length
93 bp
Sequences
Splice sites
3' ss Seq
GAACCCTTACACTTTCACAGAGA
3' ss Score
5.28
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGGGAGTGTGGAAAGTGTTCCCAGCAAGCCCCCTGCCCACTCGAGACAAAACCACTT
Seq A exon
AGAGAGACGAGGAAATGCATCTATTCCATCTACTTCATGGGGAAGAGATCCGTATTCATTGGGTGCCAGCCACAGTGTGTGAGAACCATCATT
Seq C2 exon
ACAAGAGCCTGCTGTGCTGGCTTCTTTGGCCCCCAGTGCCAAGCCTGCCCCGGGAGAGGTCAGAATGTGTGCTCTGGGAACGGCTTCTGTCTGGATGGCGTGAATGGCACTGGCACGTGCCAGTGCGGGCTGGGCTTCAGTGGGACAGCCTGTGAAACCTGCACTGAGGGGAAGTATGGTATCCACTGCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'43-44,'43-43,44-44
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCACTCGAGACAAAACC
R:
GTTTCACAGGCTGTCCCACTG
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]