DreEX6001338 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10746377-10748597:+
Coord C1 exon
chr4:10746377-10746439
Coord A exon
chr4:10748210-10748305
Coord C2 exon
chr4:10748402-10748597
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTGTTTATTATCAGATG
3' ss Score
7.96
5' ss Seq
ATTGTATGT
5' ss Score
4.34
Exon sequences
Seq C1 exon
GGACGTTGCATGGACTGTTTCCAAACAATTATAAACCCATGTCCTTCAGGAACTAAAAAAGTG
Seq A exon
ATGAGCAGAAAGAGAAGATGCATGTACAGCCGGGTGTTGCATGGAGACACACTGCTGACCATTGGATGTAAATTTTCTTGTGAGAAAATGACCATT
Seq C2 exon
GAAAGAATATGTTGTTCGGGTCATTATGGTATCAACTGTGAGAAGTGCCCGGGATCCGAAGATCAGTCTTGCTTTGGCAACGGCATATGTAAAGACGGCATCAATGGCACAGGGGTCTGTCTGTGCAACCAGGGCTTTAACGGCACCGCATGTGAATCCTGCCAGCCTGGCAAATATGGAATTCATTGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'40-44,'40-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTGCATGGACTGTTTCC
R:
TGTGCCATTGATGCCGTCTTT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]