BtaEX0034737 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67715271-67718128:+
Coord C1 exon
chr5:67715271-67715327
Coord A exon
chr5:67716375-67716470
Coord C2 exon
chr5:67717933-67718128
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAATTGCTGTTATTTCATAGGGC
3' ss Score
7.39
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GGAAAGTGTGGAAAGTGTCCCCAGCCGCCCATCTGCCCATTTGGAACTAAACCGCTA
Seq A exon
GGCCAAGAGATGAGGAGATGTCTCTATACCATTTATTTCATGGGCAGGCGATCCCCGTTCTTAGGGTGCCAGCCAAAGTGTGTGAAAACCGTCATT
Seq C2 exon
ACAAGAGAATGCTGCGCGGGCTACTTTGGCCCCCAGTGCCAGCCTTGCCCAGGGAAACCTGAGAACGTCTGCTTCGGAAATGGGATCTGCTTGGACGGAGTCAATGGCACAGGCGTGTGTGAGTGTGGGCGGGGCTTCAGCGGGACGGCCTGTGAGACCTGCGCTGAGGGCAAGTACGGCATCCACTGCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'39-42,'39-41,40-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=47.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATTTGGAACTAAACCGC
R:
GGTCTCACAGGCCGTCCC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development