Special

HsaEX6068710 @ hg38

Exon Skipping

Gene
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103704881-103706987:+
Coord C1 exon
chr12:103704881-103705027
Coord A exon
chr12:103705632-103705727
Coord C2 exon
chr12:103706792-103706987
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAGTCATTAATATTTCACAGGGT
3' ss Score
4.55
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TAGCCAGTTGAGGACCGCAGCAAGAAATCTTGTCAGAGAAGAGAGATTCCATATCCAAAACCATATCCAGCCTGGATATATTCCACCTGCCTGATTTCCTTTTATAGTTGAAGTTGCAACTAACTTTCTCAAAGAAACAGATGGCAG
Seq A exon
GGTAATGAGAAGAGGAGATGCATCTATACCTCCTATTTCATGGGAAGACGAACCCTGTTTATTGGGTGCCAGCCAAAATGTGTGAGAACCGTCATT
Seq C2 exon
ACGAGAGAATGCTGTGCCGGCTTCTTTGGCCCCCAATGCCAGCCCTGCCCAGGGAATGCCCAGAATGTCTGCTTTGGTAATGGCATCTGTTTGGATGGAGTGAATGGCACAGGTGTGTGTGAGTGTGGGGAGGGCTTCAGCGGCACAGCCTGCGAGACCTGCACCGAGGGCAAGTACGGCATCCACTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'42-62,'42-60,44-62=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCGCAGCAAGAAATC
R:
CAAAGAAGCCGGCACAGCATT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains