HsaEX6068710 @ hg38
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103704881-103706987:+
Coord C1 exon
chr12:103704881-103705027
Coord A exon
chr12:103705632-103705727
Coord C2 exon
chr12:103706792-103706987
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAGTCATTAATATTTCACAGGGT
3' ss Score
4.55
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TAGCCAGTTGAGGACCGCAGCAAGAAATCTTGTCAGAGAAGAGAGATTCCATATCCAAAACCATATCCAGCCTGGATATATTCCACCTGCCTGATTTCCTTTTATAGTTGAAGTTGCAACTAACTTTCTCAAAGAAACAGATGGCAG
Seq A exon
GGTAATGAGAAGAGGAGATGCATCTATACCTCCTATTTCATGGGAAGACGAACCCTGTTTATTGGGTGCCAGCCAAAATGTGTGAGAACCGTCATT
Seq C2 exon
ACGAGAGAATGCTGTGCCGGCTTCTTTGGCCCCCAATGCCAGCCCTGCCCAGGGAATGCCCAGAATGTCTGCTTTGGTAATGGCATCTGTTTGGATGGAGTGAATGGCACAGGTGTGTGTGAGTGTGGGGAGGGCTTCAGCGGCACAGCCTGCGAGACCTGCACCGAGGGCAAGTACGGCATCCACTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'42-62,'42-60,44-62=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCGCAGCAAGAAATC
R:
CAAAGAAGCCGGCACAGCATT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains