MmuEX6053488 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:48453540-48623479:-
Coord C1 exon
chr15:48623273-48623479
Coord A exon
chr15:48504950-48505172
Coord C2 exon
chr15:48453540-48453652
Length
223 bp
Sequences
Splice sites
3' ss Seq
CTATTTGTCTTGTGTTGCAGGAT
3' ss Score
11.51
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAGCCAGAATCCAGAGCTCGCGAATAATATGAAAGGGAGCCGCAAAGGAGAAAGCAGAGCAAAGGAATCCAAACCCCGGGAGCCTGGCACGCGAAGATGCGCTAAATGTGGCCGCCTAGACTTCATCCTGAAGAAGAAAATGGGGATTAAAAGTGGATTTACGTTTTGGAACCTCGTCTTTTTATTGACGCTGTCTTGTGTAAAAG
Seq A exon
GATTTATTTATACATGTGGTGGAACTTTAAAAGGACTCAATGGCACCATAGAAAGCCCTGGTTTTCCATATGGATATCCAAATGGTGCGAACTGTACATGGGTAATAATAGCAGAAGAACGAAATAGAATACAAATTGTTTTTCAGTCGTTTGCACTAGAAGAGGAGTACGACTACTTATCTTTGTATGATGGACATCCTCATCCGACGAACTTTAGGACAAG
Seq C2 exon
GTTAACAGGATTCCACCTACCACCACCAGTGACAAGTACCAAATCTGTGTTCTCACTACGGTTGACCAGTGACTTTGCTGTTAGTGCTCACGGATTTAAAGTATATTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=92.0)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCCAGAGCTCGCGAAT
R:
TCCGTGAGCACTAACAGCAAA
Band lengths:
296-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: