HsaEX0017518 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:114290821-114449328:-
Coord C1 exon
chr8:114448906-114449328
Coord A exon
chr8:114326800-114327022
Coord C2 exon
chr8:114290821-114290933
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTCTTTTGTTGCAGGAT
3' ss Score
11.11
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TGGTGGTTGCTATAACGAGCCAGAATTGGGGTAGATTTTGGTGGAGGGGAAAAAACGCACAAGAAAAGACAGAATCCAGAGTAGCGGAGACTTTGTGCCCCCGTTGGAGAGATGGTTGAGTCCTCGTCAAGGTTGCTGTGGTATCCCAGAAACACCATTCACTCCGAGCTGTGACCGCGCACCAACAACAGCAACAACTCCACTGCGCCGGGCTGAGGAGCAGGAATTAGGAGCTCGCGAATAATATGAAAGGGATCCGCAAAGGGGAAAGCCGAGCAAAGGAATCCAAACCCTGGGAGCCTGGCAAGCGAAGATGCGCTAAATGTGGCCGCCTAGACTTCATCCTGATGAAGAAAATGGGGATTAAAAGTGGATTTACGTTTTGGAACCTCGTCTTTTTATTGACGGTGTCTTGTGTGAAAG
Seq A exon
GATTTATTTATACATGTGGTGGAACTTTAAAAGGACTTAATGGCACTATAGAAAGCCCTGGTTTTCCATATGGATATCCAAATGGTGCAAACTGCACATGGGTAATAATAGCAGAAGAACGAAATAGAATACAAATTGTTTTTCAGTCATTTGCTCTAGAAGAAGAATACGACTACTTATCATTATATGATGGACATCCTCATCCTACAAACTTTAGGACAAG
Seq C2 exon
GTTAACAGGATTCCATCTGCCACCTCCAGTGACAAGTACCAAATCTGTGTTCTCACTACGTTTGACCAGTGATTTTGCAGTTAGTGCTCATGGATTTAAGGTATATTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'0-4,'0-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=92.0)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCACTCCGAGCTGTGACC
R:
AGGTGGCAGATGGAATCCTGT
Band lengths:
293-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)