GgaEX7002551 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:133272712-133331979:-
Coord C1 exon
chr2:133331932-133331979
Coord A exon
chr2:133299461-133299683
Coord C2 exon
chr2:133272712-133272824
Length
223 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTTGTTTGTTTAGGAT
3' ss Score
10.47
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTATATTGCCTGCTAATGTTCCTGGAAGTTGTCAACAAATTAAAAG
Seq A exon
GATTTATTTATACCTGTGGTGGAACTTTAAAAGGACTGAATGGCACTATAGAAAGCCCTGGCTTCCCGTATGGATATCCAAATGGTGCAAACTGTACATGGGTTATAATAGCAGAAGAAAGAAACAGAATACAGATCGTCTTTCAGTCTTTTGCTCTCGAAGAAGAATATGATTATTTATCATTATATGATGGGCATCCTCATCCTGCAAACTTTAGGACAAG
Seq C2 exon
GTTAACAGGATTTCATCTTCCTCCACCTGTGACAAGTACAAAATCTGTATTCTCGCTACGCTTGACAAGTGACTTTGCAGTTAGTGCTCATGGGTTTAAAGTTTACTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'1-3,'1-2,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=92.0)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATTGCCTGCTAATGTTCCTGGA
R:
TCATAGTAAACTTTAAACCCATGAGC
Band lengths:
156-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]